Index _ | A | B | C | D | E | F | G | H | I | J | K | L | M | N | O | P | R | S | T | U | V | X | Z _ __init__() (AnisotropyTOVConfig method) (AnisotropyTOVSolver method) (BaseEOSConfig method) (BaseSamplerConfig method) (BaseTOVConfig method) (BijectiveTransform method) (BlackJAXNSAWConfig method) (BlackJAXNSAWSampler method) (BlackjaxSampler method) (BlackJAXSMCNUTSSampler method) (BlackJAXSMCRandomWalkSampler method) (BlackjaxSMCSampler method) (ChiEFTLikelihood method) (CombinedLikelihood method) (CombinePrior method) (ConstraintEOSLikelihood method) (ConstraintGammaLikelihood method) (ConstraintTOVLikelihood method) (Crust method) (EOSData method) (FamilyData method) (Fixed method) (Flow method) (FlowMCSampler method) (FlowMCSamplerConfig method) (FlowTrainingConfig method) (GRTOVConfig method) (GRTOVSolver method) (GWLikelihood method) (GWLikelihoodResampled method) (InferenceConfig method) (InferenceResult method) (Interpolate_EOS_model method) (JesterSampler method) (JesterTransform method) (LikelihoodBase method) (LogisticDistribution method) (MetaModel_EOS_model method) (MetaModel_with_CSE_EOS_model method) (MetaModel_with_peakCSE_EOS_model method) (MetamodelCSEEOSConfig method) (MetamodelEOSConfig method) (MetamodelPeakCSEEOSConfig method) (MultivariateGaussianPrior method) (NICERKDELikelihood method) (NICERLikelihood method) (NtoMTransform method) (ParsedPrior method) (PostprocessingConfig method) (Prior method) (PriorConfig method) (RadioTimingLikelihood method) (REXLikelihood method) (SamplerOutput method) (ScalarTensorTOVSolver method) (SequentialTransformPrior method) (SMCNUTSSamplerConfig method) (SMCRandomWalkSamplerConfig method) (SpectralDecomposition_EOS_model method) (SpectralEOSConfig method) (TOVSolution method) (TOVSolverBase method) (UniformPrior method) (ZeroLikelihood method) A active_groups (NICERLikelihood attribute) adaptation_rate (SMCNUTSSamplerConfig attribute) add_derived_eos() (InferenceResult method) add_eos_from_transform() (InferenceResult method) add_name() (JesterSampler method) (Prior method) amsterdam_masses (NICERKDELikelihood attribute) amsterdam_posterior (NICERKDELikelihood attribute) AnisotropyTOVConfig (class in jesterTOV.inference.config.schema) AnisotropyTOVSolver (class in jesterTOV.tov.anisotropy) B backward() (BijectiveTransform method) base_prior (CombinePrior attribute) (SequentialTransformPrior attribute) BaseEOSConfig (class in jesterTOV.inference.config.schema) BaseSamplerConfig (class in jesterTOV.inference.config.schema) BaseTOVConfig (class in jesterTOV.inference.config.schema) batch_size (FlowTrainingConfig attribute) BijectiveTransform (class in jesterTOV.inference.base.transform) BlackJAXNSAWConfig (class in jesterTOV.inference.config.schema) BlackJAXNSAWSampler (class in jesterTOV.inference.samplers.blackjax.nested_sampling.acceptance_walk) BlackjaxSampler (class in jesterTOV.inference.samplers.blackjax.base) BlackJAXSMCNUTSSampler (class in jesterTOV.inference.samplers.blackjax.smc.nuts) BlackJAXSMCRandomWalkSampler (class in jesterTOV.inference.samplers.blackjax.smc.random_walk) BlackjaxSMCSampler (class in jesterTOV.inference.samplers.blackjax.smc.base) C calculate_rest_mass_density() (in module jesterTOV.utils) ChiEFTLikelihood (class in jesterTOV.inference.likelihoods.chieft) cli_entry_point() (in module jesterTOV.inference.run_inference) CombinedLikelihood (class in jesterTOV.inference.likelihoods.combined) CombinePrior (class in jesterTOV.inference.base.prior) composite (Prior attribute) compute_b() (MetaModel_EOS_model method) compute_cs2() (MetaModel_EOS_model method) compute_energy_nucleons() (MetaModel_EOS_model method) compute_f_1() (MetaModel_EOS_model method) compute_f_star() (MetaModel_EOS_model method) compute_f_star2() (MetaModel_EOS_model method) compute_f_star3() (MetaModel_EOS_model method) compute_pressure_nucleons() (MetaModel_EOS_model method) compute_proton_fraction() (MetaModel_EOS_model method) compute_u() (MetaModel_EOS_model method) compute_v() (MetaModel_EOS_model method) compute_x() (MetaModel_EOS_model method) cond_dim (FlowTrainingConfig attribute) config (BlackJAXNSAWSampler attribute) (BlackjaxSMCSampler attribute) config_dict (InferenceResult property) ConstraintEOSLikelihood (class in jesterTOV.inference.likelihoods.constraints) ConstraintGammaLikelihood (class in jesterTOV.inference.likelihoods.constraints) ConstraintTOVLikelihood (class in jesterTOV.inference.likelihoods.constraints) construct_eos() (Interpolate_EOS_model method) (MetaModel_EOS_model method) (MetaModel_with_CSE_EOS_model method) (MetaModel_with_peakCSE_EOS_model method) (SpectralDecomposition_EOS_model method) construct_eos_and_solve_tov() (JesterTransform method) construct_family() (TOVSolverBase method) counter (CombinedLikelihood attribute) (REXLikelihood attribute) (ZeroLikelihood attribute) cov (MultivariateGaussianPrior attribute) Crust (class in jesterTOV.eos.crust) crust_name (BaseEOSConfig attribute) cs2 (Crust property) (EOSData attribute) cubic_root_for_proton_fraction() (in module jesterTOV.utils) cubic_spline() (in module jesterTOV.utils) cumtrapz() (in module jesterTOV.utils) D data (LikelihoodBase property) data_paths (InferenceConfig attribute) debug_nans (InferenceConfig attribute) destandardize_output() (Flow method) determine_keep_names() (in module jesterTOV.inference.run_inference) dloge_dlogps (EOSData attribute) dry_run (InferenceConfig attribute) E e (Crust property) e0_geom (SpectralDecomposition_EOS_model attribute) EFT_high (ChiEFTLikelihood attribute) EFT_low (ChiEFTLikelihood attribute) enabled (PostprocessingConfig attribute) eos (InferenceConfig attribute) EOSData (class in jesterTOV.tov.data_classes) es (EOSData attribute) esym() (MetaModel_EOS_model method) evaluate() (ChiEFTLikelihood method) (CombinedLikelihood method) (ConstraintEOSLikelihood method) (ConstraintGammaLikelihood method) (ConstraintTOVLikelihood method) (GWLikelihood method) (GWLikelihoodResampled method) (LikelihoodBase method) (NICERKDELikelihood method) (NICERLikelihood method) (RadioTimingLikelihood method) (REXLikelihood method) (ZeroLikelihood method) event_name (GWLikelihood attribute) (GWLikelihoodResampled attribute) experiment_name (REXLikelihood attribute) extra_constraints (EOSData attribute) extract_gw_posterior_from_bilby() (in module jesterTOV.inference.flows.bilby_extract) F FamilyData (class in jesterTOV.tov.data_classes) fetch_params() (TOVSolverBase method) final_state (BlackJAXNSAWSampler attribute) (BlackjaxSMCSampler attribute) Fixed (class in jesterTOV.inference.base.prior) fixed_mass_samples (GWLikelihood attribute) fixed_params (ParsedPrior attribute) Flow (class in jesterTOV.inference.flows.flow) flow (GWLikelihood attribute) (GWLikelihoodResampled attribute) flow_layers (FlowTrainingConfig attribute) flow_type (FlowTrainingConfig attribute) FlowMCSampler (class in jesterTOV.inference.samplers.flowmc) FlowMCSamplerConfig (class in jesterTOV.inference.config.schema) FlowTrainingConfig (class in jesterTOV.inference.flows.config) forward() (JesterTransform method) (NtoMTransform method) from_config() (JesterTransform class method) from_directory() (Flow class method) from_sampler() (InferenceResult class method) from_yaml() (FlowTrainingConfig class method) G generate_all_plots() (in module jesterTOV.inference.postprocessing.postprocessing) generate_eos_samples() (in module jesterTOV.inference.run_inference) get_crust_dir() (Crust class method) get_data() (Crust method) get_eos_type() (JesterTransform method) get_log_prob() (BlackJAXNSAWSampler method) (BlackjaxSMCSampler method) (FlowMCSampler method) (JesterSampler method) get_n_samples() (BlackJAXNSAWSampler method) (BlackjaxSMCSampler method) (FlowMCSampler method) (JesterSampler method) get_n_training_samples() (FlowMCSampler method) get_parameter_names() (JesterTransform method) get_required_parameters() (AnisotropyTOVSolver method) (GRTOVSolver method) (Interpolate_EOS_model method) (MetaModel_EOS_model method) (MetaModel_with_CSE_EOS_model method) (MetaModel_with_peakCSE_EOS_model method) (ScalarTensorTOVSolver method) (SpectralDecomposition_EOS_model method) (TOVSolverBase method) get_sampler_output() (BlackJAXNSAWSampler method) (BlackjaxSMCSampler method) (FlowMCSampler method) (JesterSampler method) get_samples() (BlackJAXNSAWSampler method) (BlackjaxSMCSampler method) (FlowMCSampler method) (JesterSampler method) get_training_sampler_output() (FlowMCSampler method) GRTOVConfig (class in jesterTOV.inference.config.schema) GRTOVSolver (class in jesterTOV.tov.gr) GWLikelihood (class in jesterTOV.inference.likelihoods.gw) GWLikelihoodResampled (class in jesterTOV.inference.likelihoods.gw) H hs (EOSData attribute) I InferenceConfig (class in jesterTOV.inference.config.schema) InferenceResult (class in jesterTOV.inference.result) init_step_size (SMCNUTSSamplerConfig attribute) injection_eos_path (PostprocessingConfig attribute) interp_in_logspace() (in module jesterTOV.utils) interpolate_eos() (Interpolate_EOS_model method) Interpolate_EOS_model (class in jesterTOV.eos.base) inverse() (BijectiveTransform method) inverse_transform_func (BijectiveTransform attribute) invert (FlowTrainingConfig attribute) J JesterSampler (class in jesterTOV.inference.samplers.jester_sampler) JesterTransform (class in jesterTOV.inference.transforms.transform) K k2 (TOVSolution attribute) L lambdas (FamilyData attribute) learning_rate (FlowMCSamplerConfig attribute) (FlowTrainingConfig attribute) likelihood (JesterSampler attribute) likelihood_transforms (JesterSampler attribute) LikelihoodBase (class in jesterTOV.inference.base.likelihood) LikelihoodConfig (in module jesterTOV.inference.config.schema) likelihoods (InferenceConfig attribute) likelihoods_list (CombinedLikelihood attribute) limit_by_MTOV() (in module jesterTOV.utils) list_available() (Crust class method) load() (InferenceResult class method) load_config() (in module jesterTOV.inference.config.parser) load_eos_data() (in module jesterTOV.inference.postprocessing.postprocessing) load_injection_eos() (in module jesterTOV.inference.postprocessing.postprocessing) load_model() (in module jesterTOV.inference.flows.flow) load_posterior() (in module jesterTOV.inference.flows.train_flow) load_prior_data() (in module jesterTOV.inference.postprocessing.postprocessing) locate_lowest_non_causal_point() (in module jesterTOV.utils) log10pcs (FamilyData attribute) log_prob (SamplerOutput attribute) log_prob() (CombinePrior method) (Fixed method) (Flow method) (LogisticDistribution method) (MultivariateGaussianPrior method) (Prior method) (SequentialTransformPrior method) log_prob_batch_size (BaseSamplerConfig attribute) LogisticDistribution (class in jesterTOV.inference.base.prior) M M (TOVSolution attribute) m_min (RadioTimingLikelihood attribute) main() (in module jesterTOV.inference.run_inference) make_contour_pressures_plot() (in module jesterTOV.inference.postprocessing.postprocessing) make_contour_radii_plot() (in module jesterTOV.inference.postprocessing.postprocessing) make_contours (PostprocessingConfig attribute) make_cornerplot (PostprocessingConfig attribute) make_cornerplot() (in module jesterTOV.inference.postprocessing.postprocessing) make_cs2 (PostprocessingConfig attribute) make_cs2_plot() (in module jesterTOV.inference.postprocessing.postprocessing) make_histograms (PostprocessingConfig attribute) make_mass_lambda_plot() (in module jesterTOV.inference.postprocessing.postprocessing) make_mass_lambda_ratio_plot() (in module jesterTOV.inference.postprocessing.postprocessing) make_mass_radius_plot() (in module jesterTOV.inference.postprocessing.postprocessing) make_masslambda (PostprocessingConfig attribute) make_massradius (PostprocessingConfig attribute) make_parameter_histograms() (in module jesterTOV.inference.postprocessing.postprocessing) make_pressure_density_plot() (in module jesterTOV.inference.postprocessing.postprocessing) make_pressuredensity (PostprocessingConfig attribute) maryland_masses (NICERKDELikelihood attribute) maryland_posterior (NICERKDELikelihood attribute) mass_matrix_base (SMCNUTSSamplerConfig attribute) mass_matrix_param_scales (SMCNUTSSamplerConfig attribute) masses (FamilyData attribute) max_density (Crust property) max_mcmc (BlackJAXNSAWConfig attribute) max_nbreak_nsat (MetamodelCSEEOSConfig attribute) (MetamodelPeakCSEEOSConfig attribute) max_patience (FlowTrainingConfig attribute) max_proposals (BlackJAXNSAWConfig attribute) max_samples (FlowTrainingConfig attribute) mean (MultivariateGaussianPrior attribute) (RadioTimingLikelihood attribute) metadata (BlackJAXNSAWSampler attribute) (BlackjaxSMCSampler attribute) (SamplerOutput attribute) MetaModel_EOS_model (class in jesterTOV.eos.metamodel) MetaModel_with_CSE_EOS_model (class in jesterTOV.eos.metamodel) MetaModel_with_peakCSE_EOS_model (class in jesterTOV.eos.metamodel) MetamodelCSEEOSConfig (class in jesterTOV.inference.config.schema) MetamodelEOSConfig (class in jesterTOV.inference.config.schema) MetamodelPeakCSEEOSConfig (class in jesterTOV.inference.config.schema) min_density (Crust property) min_nsat_TOV (BaseTOVConfig attribute) model (LikelihoodBase property) model_dir (GWLikelihood attribute) (GWLikelihoodResampled attribute) mu (EOSData attribute) mu_lowest (Crust property) MultivariateGaussianPrior (class in jesterTOV.inference.base.prior) N n (Crust property) n_chains (FlowMCSamplerConfig attribute) n_delete_frac (BlackJAXNSAWConfig attribute) n_dim (Prior property) n_eos_samples (BaseSamplerConfig attribute) n_epochs (FlowMCSamplerConfig attribute) n_global_steps (FlowMCSamplerConfig attribute) n_high (ChiEFTLikelihood attribute) n_live (BlackJAXNSAWConfig attribute) n_local_steps (FlowMCSamplerConfig attribute) n_loop_production (FlowMCSamplerConfig attribute) n_loop_training (FlowMCSamplerConfig attribute) n_low (ChiEFTLikelihood attribute) N_masses_batch_size (GWLikelihood attribute) (GWLikelihoodResampled attribute) (NICERKDELikelihood attribute) (NICERLikelihood attribute) N_masses_evaluation (GWLikelihood attribute) (GWLikelihoodResampled attribute) (NICERKDELikelihood attribute) (NICERLikelihood attribute) n_max_nsat (ChiEFTLikelihood attribute) n_mcmc_steps (SMCNUTSSamplerConfig attribute) (SMCRandomWalkSamplerConfig attribute) n_particles (SMCNUTSSamplerConfig attribute) (SMCRandomWalkSamplerConfig attribute) n_points_high (SpectralEOSConfig attribute) n_target (BlackJAXNSAWConfig attribute) nb_CSE (MetamodelCSEEOSConfig attribute) (MetamodelEOSConfig attribute) (SpectralEOSConfig attribute) nb_masses (BaseTOVConfig attribute) nb_n (ChiEFTLikelihood attribute) ndat_CSE (MetamodelCSEEOSConfig attribute) (MetamodelPeakCSEEOSConfig attribute) ndat_TOV (BaseTOVConfig attribute) NICERKDELikelihood (class in jesterTOV.inference.likelihoods.nicer) NICERLikelihood (class in jesterTOV.inference.likelihoods.nicer) nn_block_dim (FlowTrainingConfig attribute) nn_depth (FlowTrainingConfig attribute) nn_width (FlowTrainingConfig attribute) ns (EOSData attribute) NtoMTransform (class in jesterTOV.inference.base.transform) num_epochs (FlowTrainingConfig attribute) O offset_calc() (MetaModel_with_peakCSE_EOS_model method) output_dir (BaseSamplerConfig attribute) (FlowTrainingConfig attribute) output_thinning (FlowMCSamplerConfig attribute) P p (Crust property) p0_geom (SpectralDecomposition_EOS_model attribute) p_high (ChiEFTLikelihood attribute) p_low (ChiEFTLikelihood attribute) parameter_names (FlowTrainingConfig attribute) (JesterSampler attribute) (Prior attribute) parse_prior_file() (in module jesterTOV.inference.priors.parser) ParsedPrior (class in jesterTOV.inference.priors.parser) penalty_causality (ConstraintEOSLikelihood attribute) penalty_gamma (ConstraintGammaLikelihood attribute) penalty_pressure (ConstraintEOSLikelihood attribute) penalty_stability (ConstraintEOSLikelihood attribute) penalty_value (GWLikelihood attribute) (GWLikelihoodResampled attribute) (NICERKDELikelihood attribute) (NICERLikelihood attribute) (RadioTimingLikelihood attribute) plot_corner (FlowTrainingConfig attribute) plot_diagnostics() (BlackjaxSMCSampler method) plot_format (PostprocessingConfig attribute) plot_losses (FlowTrainingConfig attribute) posterior (REXLikelihood attribute) posterior() (JesterSampler method) posterior_file (FlowTrainingConfig attribute) posterior_from_dict() (JesterSampler method) postprocessing (InferenceConfig attribute) PostprocessingConfig (class in jesterTOV.inference.config.schema) print_summary() (BlackJAXNSAWSampler method) (FlowMCSampler method) (JesterSampler method) Prior (class in jesterTOV.inference.base.prior) prior (InferenceConfig attribute) (JesterSampler attribute) (ParsedPrior attribute) prior_dir (PostprocessingConfig attribute) PriorConfig (class in jesterTOV.inference.config.schema) ps (EOSData attribute) psr_name (NICERKDELikelihood attribute) (NICERLikelihood attribute) (RadioTimingLikelihood attribute) R R (TOVSolution attribute) radii (FamilyData attribute) RadioTimingLikelihood (class in jesterTOV.inference.likelihoods.radio) random_walk_sigma (SMCRandomWalkSamplerConfig attribute) REPARAM_L_BASE (SpectralDecomposition_EOS_model attribute) REPARAM_MEAN (SpectralDecomposition_EOS_model attribute) reparametrized (SpectralEOSConfig attribute) report_credible_interval() (in module jesterTOV.inference.postprocessing.postprocessing) REXLikelihood (class in jesterTOV.inference.likelihoods.rex) run_from_config() (in module jesterTOV.inference.postprocessing.postprocessing) run_sampling() (in module jesterTOV.inference.run_inference) S sample() (BlackJAXNSAWSampler method) (BlackjaxSMCSampler method) (CombinePrior method) (Fixed method) (Flow method) (FlowMCSampler method) (JesterSampler method) (LogisticDistribution method) (MultivariateGaussianPrior method) (Prior method) (SequentialTransformPrior method) sample_transforms (JesterSampler attribute) sampler (FlowMCSampler attribute) (InferenceConfig attribute) (JesterSampler attribute) SamplerOutput (class in jesterTOV.inference.samplers.jester_sampler) samples (SamplerOutput attribute) save() (InferenceResult method) save_model() (in module jesterTOV.inference.flows.train_flow) ScalarTensorTOVSolver (class in jesterTOV.tov.scalar_tensor) seed (FlowTrainingConfig attribute) (GWLikelihood attribute) (InferenceConfig attribute) (NICERLikelihood attribute) SequentialTransformPrior (class in jesterTOV.inference.base.prior) setup_likelihood() (in module jesterTOV.inference.run_inference) setup_matplotlib() (in module jesterTOV.inference.postprocessing.postprocessing) setup_prior() (in module jesterTOV.inference.run_inference) setup_transform() (in module jesterTOV.inference.run_inference) sigma_scale (SpectralEOSConfig attribute) sigmoid() (in module jesterTOV.utils) SMCNUTSSamplerConfig (class in jesterTOV.inference.config.schema) SMCRandomWalkSamplerConfig (class in jesterTOV.inference.config.schema) solve() (AnisotropyTOVSolver method) (GRTOVSolver method) (ScalarTensorTOVSolver method) (TOVSolverBase method) specification_file (PriorConfig attribute) SpectralDecomposition_EOS_model (class in jesterTOV.eos.spectral) SpectralEOSConfig (class in jesterTOV.inference.config.schema) standardization_method (FlowTrainingConfig attribute) standardize (FlowTrainingConfig attribute) standardize_input() (Flow method) std (RadioTimingLikelihood attribute) summary() (InferenceResult method) T target_acceptance (SMCNUTSSamplerConfig attribute) target_ess (SMCNUTSSamplerConfig attribute) (SMCRandomWalkSamplerConfig attribute) termination_dlogz (BlackJAXNSAWConfig attribute) tov (InferenceConfig attribute) TOVSolution (class in jesterTOV.tov.data_classes) TOVSolverBase (class in jesterTOV.tov.base) train_flow() (in module jesterTOV.inference.flows.train_flow) train_flow_from_config() (in module jesterTOV.inference.flows.train_flow) train_thinning (FlowMCSamplerConfig attribute) transform() (SequentialTransformPrior method) transform_func (NtoMTransform attribute) transformer (FlowTrainingConfig attribute) transformer_interval (FlowTrainingConfig attribute) transformer_knots (FlowTrainingConfig attribute) transforms (SequentialTransformPrior attribute) type (AnisotropyTOVConfig attribute) (BaseTOVConfig attribute) (BlackJAXNSAWConfig attribute) (FlowMCSamplerConfig attribute) (GRTOVConfig attribute) (MetamodelCSEEOSConfig attribute) (MetamodelEOSConfig attribute) (MetamodelPeakCSEEOSConfig attribute) (SMCNUTSSamplerConfig attribute) (SMCRandomWalkSamplerConfig attribute) (SpectralEOSConfig attribute) U u() (MetaModel_EOS_model method) UniformPrior (class in jesterTOV.inference.base.prior) V val_prop (FlowTrainingConfig attribute) validate() (Crust class method) validate_only (InferenceConfig attribute) validate_parameter_names() (FlowTrainingConfig class method) validate_positive_float() (FlowTrainingConfig class method) validate_positive_int() (FlowTrainingConfig class method) validate_val_prop_range() (FlowTrainingConfig class method) value (Fixed attribute) X xmax (SpectralDecomposition_EOS_model attribute) (UniformPrior attribute) xmin (UniformPrior attribute) Z ZeroLikelihood (class in jesterTOV.inference.likelihoods.combined)
